Scientific publications by the lab ...

1.     C. Song, H Phenix, V. Abedi, M. Scott, B.P. Ingalls, M. Kaern & T.J. Perkins. Estimating the Stochastic Bifurcation Structure of Cellular Networks. PLoS Comput. Biol., 6, e1000699 (2010).

1.     Dawn Fraser & Mads Kærn. A chance at survival: gene expression noise and phenotypic diversification strategies. Mol. Microbiol. 71, 1333-1340 (2009).

2.     Robin E.C. Lee, Lawrence G. Puente, Mads Kærn, & Lynn A. Megeney. A non-death role of the yeast metacaspase: Yca1p alters cell cycle dynamics. PLoS ONE. 3, doi: 10.1371/journal.pone.0002956 (2008).

3.     Matthew Scott, Brian Ingalls, Mads Kærn. Estimations of intrinsic and extrinsic noise in models of nonlinear genetic networks. CHAOS. 16, doi: 10.1063/1.2211787 (2006).

4.     Kristin Baetz & Mads Kærn. Predictable trends in potein noise. Nat. Genet. 38, 610-611 (2006).

5.     Mads Kærn & Ron Weiss. Synthetic gene regulatory systems. In: Systems Modeling in Cellular Biology. Z. Sallasi et al. (Eds.). MIT Press (2006).

6.     Daniil Zhuravel & Mads Kaern. Physics take another stab at biological control mechanisms. Mol. Sys. Biol. 1, doi: 10.1038/msb4100037 (2005).

7.     Mads Kærn, Timothy R. Elston, William J. Blake & James J. Collins. Stochasticity in gene expression. Nat. Rev. Genet. 6, 451-464 (2005).

Earlier publications by Mads Kaern

1.       Alexey Kuznetsov, Mads Kærn & Nancy Kopell. Synchrony in a population of hysteresis-based genetic oscillators. SIAM J. Appl. Math. 65, 392-425 (2005).

2.      Hideki Kobayashi*, Mads Kærn*, Michihiro Araki, Kristy Chung, Timothy S. Gardner, Charles R. Cantor & James J. Collins. Programmable cells: Interfacing natural and engineered gene networks. Proc. Natl. Acad. Sci. USA 22, 8418-8419 (2004). *Shared first authorship.

3.      Mads Kærn*, David Miguez*, Alberto Munuzuri & Michael Menzinger. Control of pattern formation by a clock-and-wavefront mechanism. Biophys. Chem., 110, 231-238 (2004).*Shared first authorship.

4.      Mads Kærn, William J. Blake & James J. Collins. The engineering of gene regulatory networks. Annu. Rev. Biomed Eng., 5, 179-206 (2003).

5.      William J. Blake*, Mads Kærn*, Charles R. Cantor & James J. Collins. Noise in eukaryotic gene expression. Nature, 422, 633-637 (2003). *Shared first authorship.

6.      Mads Kærn & Michael Menzinger. Reply to the 'Comment on "Controlled pattern formation in the CDIMA reaction with a moving boundary of illumination" ' Phys. Chem. Chem. Phys. 5, 431-431 (2003).

7.      Mads Kærn & Michael Menzinger. Experiments on flow-distributed oscillations in the Belousov-Zhabotinsky reaction. J. Phys. Chem. A, 106, 4897-4903 (2002).

8.      Mads Kærn & Michael Menzinger. Stabilization of stationary excitation pulses in an open flow without long-range inhibition. Phys. Rev. E, 65, 046202 (2002).

9.      Mads Kærn & Michael Menzinger. Propagation of excitation pulses and autocatalytic fronts in packed-bed reactors. J. Phys. Chem., 106, 3751-3758 (2002).

10.   Mads Kærn, Razvan Satnoianu, Alberto P. Munuzuri & Michael Menzinger. Controlled pattern formation in the CDIMA reaction with a moving boundary of illumination. Phys. Chem. Chem. Phys., 4, 1315-1319 (2002).

11.   Mads Kærn. The chemical basis of gene expression waves in the presomitic mesoderm. In: The origins and fate of somites. E. Sanders and C. Ordahl (Eds). Plenum Press (2001).

12.   Mads Kærn, Michael Menzinger, Razvan Satnoianu & Axel Hunding. Chemical waves in open flows of active media: their relevance to axial segmentation in biology. Faraday Discuss., 120, 295-312 (2001).

13.   Mads Kærn, Michael Menzinger & Axel Hunding. Segmentation and somitogenesis derived from phase dynamics in growing oscillatory media. J. Theor. Biol., 207, 473-493 (2000).

14.   Mads Kærn & Michael Menzinger. Reply to "Comment on 'Flow-distributed oscillations: stationary chemical waves in a reacting flow'". Phys. Rev. E 62, 2994-2995 (2000).

15.   Mads Kærn, Michael Menzinger & Axel Hunding. A chemical flow system mimics waves of gene expression during segmentation. Biophys. Chem., 87, 121-126 (2000).

16.   Mads Kærn & Michael Menzinger. Pulsating wave propagation in reactive flow: Flow-distributed oscillations. Phys. Rev E, 61, 3334-3338 (2000).

17.   Mads Kærn & Axel Hunding. The effect of slow allosteric transitions in a coupled biochemical oscillator model. J. Theor. Biol., 198 269-281 (1999).

18.   Mads Kærn & Axel Hunding. Dynamics of the cell cycle engine: Cdk2-cyclin E and the transition into mitosis. J. Theor. Biol., 193, 47-57 (1998).

19.   Axel Hunding & Mads Kærn. The effect of slow allosteric transitions in a simple biochemical oscillator model. J. Theor. Biol., 191, 309-322 (1998).